Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLTKPIIGITGNEREMSDIPGYYYDSVS-RHISEGVKNAGGLPVILPISEAESAKAYVEMIDKLIISGGQNVLPSYYGEEKIIESDDYSLARDIFEFALVDEALKQNKPIFAICRGMQLVNVALGGTLNQSID-------NHYQ--EPYIGFAHYLNVEKGSFLEGFISGDFRINSLHRQSVKLLAEGLIVSARDPRDGTVEAYE-SRTEQCIIGVQWHPELMLH-QIENQTLFGYFVNET
3FIJ Chain:A ((4-240))
---KPVIGITG-----------------QQRYVDAIQKVGGFPIALPIDDPSTAVQAISLVDGLLLTGGQDITPQLYLEEPSQEIGAYFPPRDSYEIALVRAALDAGKPIFAICRGMQLVNVALGGTLYQDISQVETKALQHLQRVDEQLG-SHTIDIEPTSELAKHHPNKKLVNSLHHQFIKKLAPSFKVTART-ADGMIEAVEGDNLPSWYLGVQWHPELMFQTDPESEQLFQALVDES
General information:
TITO was launched using:
RESULT:
Template:
3FIJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -104475 for 1780 contacts (-58.7/contact) +
2D Compatibility (PS) -21857 + (NN) -5316 + (LL) 988
1D Compatibility (HY) -17200 + (ID) 4650
Total energy: -152510.0 ( -85.68 by residue)
QMean score : 0.482
(partial model without unconserved sides chains):
PDB file :
Tito_3FIJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3FIJ-query.scw
PDB file :
Tito_Scwrl_3FIJ.pdb
: