Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MIEITWTVKYITEFIATAFLIILGNGAVANVDLKGTKGNNSGWIIIAIGYGLGVMMPALMFGNVSGNHINPAFTLGLAFSGLFPWAHVGQYILAQILGAMFGQLVVVMVYQPYFVKTENPNH----------VLGSFSTISALDDGQKSSRKAAYINGFLNEFVGSFVLFFGALALTKNYFGVELVGKLVQAGYDQTTAATRISPYVTGSLAVAHLGIGFLVMTLVASLGGPTGPALNPARDLGPRIVHRLLPKQILGQAKEDSKWWYAWVPVLAPIVASILAVALFKLLYL |
| 1LDF Chain:A ((6-255)) | ----TLKGQCIAEFLGTGLLIFFGVGCVAALKVAGA---SFGQWEISVIFGLGVAMAIYLTAGVSGAHLNPAVTIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVRGSVESVDLAGTFSTYPNPH-I-------NFVQAFAVEMVITAILMGLILALTDDGNGVP-------------------------RGPLAPLLIGLLIAVIGASMGPLTGTAMNPARDFGPKVFAWLAGWGNVAF-TGGRDIPYFLVPLFGPIVGAIVGAFAYRKLIG |
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General information:
TITO was launched using:
| RESULT:
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Template: 1LDF.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -179564 for 2121 contacts (-84.7/contact) +
2D Compatibility (PS) -24724 + (NN) -5682 + (LL) 2636
1D Compatibility (HY) -24400 + (ID) 4000
Total energy: -235734.0 ( -111.14 by residue)
QMean score : 0.281
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