Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKKSKIAKFQKQQKLVEQYAELRRELKEK-GDYEA-------LRKLPKDSNPNRLKNRDLIDGRPHAYMRKFGMSRINFRNLAYKGQIPGIKKASW
4ADV Chain:N ((1-100))
-AKQSMKAREVKRVALADKYFAKRAELKAIISDVNARWNAVLKLQTLPRDSSPSRQRNRCRQTGRPHGFLRKFGLSRIKVREAAMRGEIPGLKKASW
General information:
TITO was launched using:
RESULT:
Template:
4ADV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 14146 for 489 contacts (28.9/contact) +
2D Compatibility (PS) -9364 + (NN) -6060 + (LL) 208
1D Compatibility (HY) -3200 + (ID) 2200
Total energy: -6470.0 ( -13.23 by residue)
QMean score : 0.415
(partial model without unconserved sides chains):
PDB file :
Tito_4ADV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4ADV-query.scw
PDB file :
Tito_Scwrl_4ADV.pdb
: