Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEENMNIKQLKSKTMLGTVALVSAFSFASTNADANTYNYAVDVDYLASAEEIAQAHPASNTFPLGQCTWGVKEMATWAGNWWGNGGDWAASAASAGYTVGTQPRVGSIVCWTDGSYGHVAYVTAVDPVTNKIQVLESNYAGHQWIDNYRGWFDPQNTATPGVVSYIYPN
4CGK Chain:B ((284-392))
----------------------------------------------------------ASSYPIGECTWGVKTLAPWAGDYWGNGAQWATSAAAAGFRTGSTPQVGAIACWNDGGYGHVAVVTAVESTT-RIQVSESNYAGNRTIGNHRGWFNP-TTTSEGFVTYIYAD
General information:
TITO was launched using:
RESULT:
Template:
4CGK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -61819 for 871 contacts (-71.0/contact) +
2D Compatibility (PS) -12590 + (NN) -14027 + (LL) 4688
1D Compatibility (HY) -10000 + (ID) 3200
Total energy: -96948.0 ( -111.31 by residue)
QMean score : 0.605
(partial model without unconserved sides chains):
PDB file :
Tito_4CGK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4CGK-query.scw
PDB file :
Tito_Scwrl_4CGK.pdb
: