Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKSLQEMRERVCEANKSLPVHSLVKFTWGNVSEVDREAGLIVIKPSGVDYDQLTPENMVVTDLE-GNIVEGDLNPSSDLPTHVQLYKAWPEVGGIVHTHSTEAVGWAQAGRDIPFYGTTHADYFYGPVPCARSLSEDEVNTAYEKETGSVIIEEFERRDLDPMAVPGIVVRNHGPFTWGKDPAQAVYHSVVLEEVAKMNRFTEQINPRVEPAPKYIMDKHYLRKHGPNAYYGQKGQEH
1JDI Chain:A ((2-223))
----LEDLKRQVLEANLALPKHNLVTLTWGNVSAVDRERGVFVIKPSGVDYSIMTADDMVVVSIETGEVVEGAKKPSSDTPTHRLLYQAFPSIGGIVHTHSRHATIWAQAGQSIPATGTTHADYFYGTIPCTRKMTDAEINGEYEWETGNVIVETFEKQGIDAAQMPGVLVHSHGPFAWGKNAEDAVHNAIVLEEVAYMGIFCRQLAPQLPDMQQTLLNKHYLRKH-------------
General information:
TITO was launched using:
RESULT:
Template:
1JDI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -73598 for 1884 contacts (-39.1/contact) +
2D Compatibility (PS) -23875 + (NN) -14120 + (LL) 432
1D Compatibility (HY) -21600 + (ID) 6050
Total energy: -138811.0 ( -73.68 by residue)
QMean score : 0.516
(partial model without unconserved sides chains):
PDB file :
Tito_1JDI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1JDI-query.scw
PDB file :
Tito_Scwrl_1JDI.pdb
: