Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAAGPNIVMTRVDERLIHGQGQLWVKFLSCNTVIVANDDVSKDHLQQTLMKTVVPESIALRFFDIQKVIDIIHKANPAQTIFIIVKDLKDVYRLVAGGVPIKEINIGNIHNGEGKEQVSRSIFLGMKDKEIIRKLNQEYHIAFNTKTTPTGNDGAVEVNILDYI
3P3V Chain:A ((5-163))
----PNIIMTRVDERLIHGQGQLWVKFLNCNTVIVANDAVSEDKIQQSLMKTVIPSSIAIRFFSIQKVIDIIHKASPAQSIFIVVKDLQDAKLLVEGGVPITEINIGNIHKTDDKVAITQFISLGETDKSAIRCLAHDHHVVFNTKTTPAGN-SASDVDILDYI
General information:
TITO was launched using:
RESULT:
Template:
3P3V.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -148965 for 1287 contacts (-115.7/contact) +
2D Compatibility (PS) -16942 + (NN) -7920 + (LL) 248
1D Compatibility (HY) -19200 + (ID) 5600
Total energy: -198379.0 ( -154.14 by residue)
QMean score : 0.574
(partial model without unconserved sides chains):
PDB file :
Tito_3P3V.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3P3V-query.scw
PDB file :
Tito_Scwrl_3P3V.pdb
: