Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | METTLNYIKTLTSIPSPTGFTQTIMTYIIKELEAFGYSPIRTNKGGVMVSLKGKNDTKHRMITAHLDTLGAMVRAIKPDGRLKIDLIGGYTYNAIEGENCTIHLSKNGKEISGTALIHQTSVHVYKDAGTAERNQTNMEIRLDEKVTTADETRALGIQVGDFISFDPRTIITDSGFIKSRYLDDKVSAGILMELLSVYKKEDIQLPYTTHFYFSAFEELGHGANSSIPNETVEYLAVDMGAMGDDQETDEYTVSICVKDASGPYHYELRQHLVSLAENNNIPYKLDIYPYYGSDASAAMRAGAEVKHALLGAGIESSHSYERTHIDSIQATELLVDAYLKSNMVD |
| 2GRE Chain:A ((8-348)) | ---TMELIKELVSIPSPSGNTAKIINFIENYVSEWNVETKRNNKGALILTVKGKNDAQHRLLTAHVDTLGAMVKEIKPDGRLSLSMIGGFRWNSVEGEYCEIETS-SGKTYTGTILMH-------------------IEVRIDERVFSADEVRELGIEVGDFVSFDPRVQITESGYIKSRHLDDKVSVAILLKLIKRLQDENVTLPYTTHFLISNNE----GGNSNIPEETVEYLAVDMGALGDG--SDEYTVSICAKDSSGPYHYALRKHLVELAKTNHIEYKVDIYPYY--------RAGFDVKHALIGAGIDSSHAFERTHESSIAHTEALVYAYVMSNLIE |
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General information:
TITO was launched using:
| RESULT:
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Template: 2GRE.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -186024 for 2571 contacts (-72.4/contact) +
2D Compatibility (PS) -33426 + (NN) -15358 + (LL) 2176
1D Compatibility (HY) -34800 + (ID) 9300
Total energy: -276732.0 ( -107.64 by residue)
QMean score : 0.557
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