Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRITIFCGASTGENPVYSEKTVALAQWMAQNKHSLVYGGGK-VGLMGVMADTVIANGGYTTGVIPTFLRDREIAHENLSELIIVNNMPERKAKMMLLGDAFIALPGGPGTLEEISEVISWSRIGQNDNPCILYNVNGYFNDLKNMFDHMVGEGFLSLEDRENVLFSDDITEIEDFITNYKVPSTRQY
1T35 Chain:A ((2-179))
KTICVFAGSNPGGNEAYKRKAAELGVYMAEQGIGLVY-GGSRVGLMGTIADAIMENGGTAIGVMPSGLFSGEVVHQNLTELIEVNGMHERKAKMSELADGFISMPGGFGTYEELFEVLCWAQIGIHQKPIGLYNVNGYFEPMMKMVKYSIQEGFSNESHLKLIHSSSRPDELIEQMQNY--------
General information:
TITO was launched using:
RESULT:
Template:
1T35.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -125585 for 1383 contacts (-90.8/contact) +
2D Compatibility (PS) -19925 + (NN) -9238 + (LL) 280
1D Compatibility (HY) -13200 + (ID) 3900
Total energy: -171568.0 ( -124.05 by residue)
QMean score : 0.415
(partial model without unconserved sides chains):
PDB file :
Tito_1T35.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1T35-query.scw
PDB file :
Tito_Scwrl_1T35.pdb
: