Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLRRPVLEDKEEILAMYKEFQKESSSVDGGFYE------PT-MHFEDWLDHNLNMELGVGVPDNFVPYIQFVSFDNDNNAIGFLNLRLRLNDTLLEKGGHI-GYSIRPRQRGKGYAKEQLKLGIEQAHLKNINEILVTCHVDNDASKSVILANGGVLEDCLHQTERYWIT
2CY2 Chain:A ((1-151))
VRIRRAGLEDLPGVARVLVDTWRAT--YRGVVPEAFLEGLSYEGQAERWAQRLKTP---------TWPGRLFVAESESGEVVGFAAFGPDRASGFPGYTAELWAIYVLPTWQRKGLGRALFHEGARLLQAEGYGRMLVWVLKENPKGRGFYEHLGGVLLGEREIELGGAKL
General information:
TITO was launched using:
RESULT:
Template:
2CY2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -24518 for 1008 contacts (-24.3/contact) +
2D Compatibility (PS) -15953 + (NN) -10840 + (LL) -32
1D Compatibility (HY) -2400 + (ID) 1250
Total energy: -54993.0 ( -54.56 by residue)
QMean score : 0.311
(partial model without unconserved sides chains):
PDB file :
Tito_2CY2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2CY2-query.scw
PDB file :
Tito_Scwrl_2CY2.pdb
: