Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRIMGLDVGSKTVGVAISDPLGFTAQGLEIIKIDEESGNFGFDRLAELVKEYKVDKFVVGLPKNMNNTSGPRVEASQAYGDKITELFNLPVEYQDERLTTVQAERMLVEQADISRGKRKKVIDKLAAQLILQNYLDRMF
1NMN Chain:A ((5-138))
--LLAFDFGTKSIGVAVGQRITGTARPLPAIK--AQDGTPDWNIIERLLKEWQPDEIIVGLPLNMDGTEQPLTARARKFANRIHGRFGVEVKLHDERLSTV------------------GKVDSASAVIILESYFEQGY
General information:
TITO was launched using:
RESULT:
Template:
1NMN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -56469 for 877 contacts (-64.4/contact) +
2D Compatibility (PS) -12772 + (NN) -5851 + (LL) 2104
1D Compatibility (HY) -10400 + (ID) 1900
Total energy: -85288.0 ( -97.25 by residue)
QMean score : 0.581
(partial model without unconserved sides chains):
PDB file :
Tito_1NMN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1NMN-query.scw
PDB file :
Tito_Scwrl_1NMN.pdb
: