Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKKKLVSSLLKCSLIIIVSFAGGAFASFVMNHNDNIPNGGVTKTSKVNYNNITPTTKAVKKVQNSVVSVINYKQQESRSDLSDFYSHFFGNQGGNTDKGLQVYGEGSGVIYKKDGKNAYVVTNNHVIDGAKQIEIQLADGSKAVGKLVGSDTYSDLAVVKIPSDKVSNIAEFADSSKLNIGETAIAIGSPLGTEYANSVTQGIVSSLKRTVTMTNEEGQTVSTNAIQTDAAINPGNSGGALINIEGQVIGINSSKISSTSNQTSGQSSGNSVEGMGFAIPSNDVVKIINQLESNGQVERPALGISMAGLSNLPSDVISKLKIPSNVTNGIVVASIQSGMPAQG-KLKKYDVITKVDDKEVVSPSDLQSLLYGHQVGDSITVTFYRGENKQTVTIKLTKTSKDLAKQRANN--------------------------------------------------------------------------------------- |
| 3PV2 Chain:A ((6-439)) | ---------------------------------------------------MPSMAPVLKNIMPAIVNVAVQGYLPNR----------------------KFESIGSGVIIDPN--NGVIITNDHVIRNASLITVTLQDGRRLKARLIGGDSETDLAVLKIDAKNLKSL-VIGDSDKLEVGDFVVAIGNPFGL--SQSATFGIVSALK---------------NFIQTDAAINPGNSGGALVNAKGELIGINTAILV----------------GIGFAIPINMVKDVAQQIIKFGSIHRGLMGIFVQHLT---PELAQAMGYPED-FQGALVSQVNPNSPAELAGLKAGDIITQINDTKITQATQVKTTISLLRVGSTVKIIVERDNKPLTLSAVVTDIKSHEQKLQSNNPFLYGLALRAFEQESPPHGNVIGVQVVGASENSAGWRAGIRPGDIIISANKKPVTDVKSLQTIAQEKKKELLVQVLRGPGSMYLLVI |
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General information:
TITO was launched using:
| RESULT:
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Template: 3PV2.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -110955 for 2449 contacts (-45.3/contact) +
2D Compatibility (PS) -32044 + (NN) -11727 + (LL) 4080
1D Compatibility (HY) -21600 + (ID) 5150
Total energy: -177396.0 ( -72.44 by residue)
QMean score : 0.524
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