Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMAPKDVRALIREGKINGPTAGMSGGYAQANLVVLKKDLAFDFLLFCQRNQKPCPVLDVTEAGSPVPSLAAPDADIRTDFPKYRIYRHGILTEEVSDITPYWED--DFVGFLIGCSFSFEQALINNGIAVRHIDEGTNVSMYKTNIDCVPAGAFHGQMVVSMRPVPERLAVRAAQVTSRFPAVHGGPIHIGNPGAIGIRDLGKPDFGDAVSIRDGEVPVFWACGVTPQAVAMNVKPEMVITHAPGHMLITDIRDESLAVL
2PIF Chain:A ((14-262))-AAREARGTYRNGL-VTPTAGVAPGMTQANLIALPRDWAYDFLLYAQRNPKACPILDVSDAGSP-TTLLAEGSDLRTDIPMYRIWRDGKLAEEVSDATQAWAEHDDMVAFLIGCSFTFETPLQEAGIEVRHITDGCNVPMYRTNRACRPAGRLHGEMVVSMRPIPADRVAEASAISGR----HGAPVHIGEPGRLGINDLSRPDFGDAVSIKPGEVPVFWACGVTPQAAVMASGVPFAITHSPGYMFITDVP-------


General information:
TITO was launched using:
RESULT:

Template: 2PIF.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1412 -153235 -108.52 -630.59
target 2D structure prediction score : 0.71
Monomeric hydrophicity matching model chain A : 0.86

3D Compatibility (PKB) : -108.52
2D Compatibility (Sec. Struct. Predict.) : 0.71
1D Compatibility (Hydrophobicity) : 0.86
QMean score : 0.478

(partial model without unconserved sides chains):
PDB file : Tito_2PIF.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-2PIF-query.scw
PDB file : Tito_Scwrl_2PIF.pdb: