Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMNKTTNGWINGFIGVLIFSGSLPATRLAVSDFDPLFLTVCRAAIAGVLAGGLLLIFRQQHPAKRDLISLLVVAFGVVIGFPLLTALALQHVTSAHAIVFIGLLPLATAVFGVLRGGERPRPVFWIFSAAGSLLVAGFALIQGGGSSPL--GDAYMLASIVVCGL-----GYAEGAKLSRRLGNWQVISWALVLSLPLMLPLSFFFTPDSWSAIGVPALLSLAYVSLFSMLIGFVFWYRGLAQGGIAAVGQLQLLQPFFGLLLASVILHEKVGWALVAVNIAVIMCVAAARRFAK
4JCD Chain:A ((193-259))----------------------------------------------------------------------------------------------------------TRYFGTLTGGENVPPVLHITNTATTVLLDEF------GVGPLCKGDNLYLSAVDVCGMFTNRSGYQQWRGLSR-------------------------------------------------------------------------------------------------------------------


General information:
TITO was launched using:
RESULT:

Template: 4JCD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 76 -4887 -64.30 -81.44
target 2D structure prediction score : 0.30
Monomeric hydrophicity matching model chain A : 0.45

3D Compatibility (PKB) : -64.30
2D Compatibility (Sec. Struct. Predict.) : 0.30
1D Compatibility (Hydrophobicity) : 0.45
QMean score : -0.083

(partial model without unconserved sides chains):
PDB file : Tito_4JCD.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4JCD-query.scw
PDB file : Tito_Scwrl_4JCD.pdb: