Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMKLDEFTIGQVFKTKSLKVSKDDIMRFA---GEFDPQYMHVDEEKASKGRFNGIIASGIQTLAISFKLW---IEEGFYGDDIIAGTEMNHMTFIKPVYPDDELFTIVEVLDKQPKRNELGILTVLLSTYNQKEVKVFEGELSVLIKR
1Q6W Chain:A ((20-157))-------IGEKIEGLPRTVTETDIWTFAYLTADFFP--LHTDVEFAKKTIFGKPIAQGMLVLSIALGMVDQVILSNYDVSSVIAFFGIKDVRFLRPVFIGDTIAASAEVVEKQDFDEKSGVVTYKLEVKNQRGELVLTALYSALIRK


General information:
TITO was launched using:
RESULT:

Template: 1Q6W.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 575 -74624 -129.78 -565.33
target 2D structure prediction score : 0.43
Monomeric hydrophicity matching model chain A : 0.72

3D Compatibility (PKB) : -129.78
2D Compatibility (Sec. Struct. Predict.) : 0.43
1D Compatibility (Hydrophobicity) : 0.72
QMean score : 0.310

(partial model without unconserved sides chains):
PDB file : Tito_1Q6W.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1Q6W-query.scw
PDB file : Tito_Scwrl_1Q6W.pdb: