Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMGRKWNNIKEKKASKDANTSRIYAKFGREIYVAAKQGEPDPESNQALKVVLERAKTYSVPKNIIERAIEKAKGGAEENYDELRYEGFGPNGSMIIVDALTNNVNRTAPEVRAAFGKNGGNMGVSGSVAYMFDATAVIGVEGKTADEAL-EILMEADVDVRDILEEDDSAI-VYAEPDQFHAVQEAFKNAGVEEFTVAELTMLAQSEVTLPDDAKEQFEKLIDALEDLEDVQQVYHNVDLGE
4F3Q Chain:A ((9-244))---KWANIKHAKARQDAKRGKVFTKLIREITVAARLGGEDIDSNPRLRAVVDKAFAANMPKDTITRAIKRGA----DNLVEVRYEGYGPSGVAVMVDCLTDNKNRTVAEVRHAFSKCDGNLGTEGSVAYLFKQRGLITFPPNSDEEKIMEIALE--VGAEDVTTNDDGSIDVTTLPEDFEKIRNAMKAADLNP-SHAEVTVLASTEVGLDKDSAEQMLRLTEMLEDLDDVQNVYSNADYPE


General information:
TITO was launched using:
RESULT:

Template: 4F3Q.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 953 -86547 -90.81 -377.93
target 2D structure prediction score : 0.55
Monomeric hydrophicity matching model chain A : 0.85

3D Compatibility (PKB) : -90.81
2D Compatibility (Sec. Struct. Predict.) : 0.55
1D Compatibility (Hydrophobicity) : 0.85
QMean score : 0.593

(partial model without unconserved sides chains):
PDB file : Tito_4F3Q.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4F3Q-query.scw
PDB file : Tito_Scwrl_4F3Q.pdb: