Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMSQPLFTATVSAVGGREGKVISSDRVLELDVAMPGTPRAKKLEKATNPEQLFAAGYAACFDSALQLVARTERVKVETEVTANVSLLKDEADQGYKLGVTLQVKGEGVSASELEALVKKAHGVCPYSKATSGNIDVTLEVAE
2BJO Chain:A ((2-135))---ALFTAKVTARGGRAGHITSDDGVLDFDIVMPNAAAAG--QTGTNPEQLFAAGYAACFGGALEHVAKEQNIEIDSEIEGQVSLMKDESDGGFKIGVTLVVNTKDLDREKAQELVNAAHEFCPYSKATRGNVDVKLEL--


General information:
TITO was launched using:
RESULT:

Template: 2BJO.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 492 -73798 -149.99 -550.73
target 2D structure prediction score : 0.73
Monomeric hydrophicity matching model chain A : 0.87

3D Compatibility (PKB) : -149.99
2D Compatibility (Sec. Struct. Predict.) : 0.73
1D Compatibility (Hydrophobicity) : 0.87
QMean score : 0.582

(partial model without unconserved sides chains):
PDB file : Tito_2BJO.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-2BJO-query.scw
PDB file : Tito_Scwrl_2BJO.pdb: