Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSDPARGAEAEDAYGFPAGLWRWLQRHPPPALHRLTRFRSPLRGPWLTSVFGLVLLVALPFVIITGLLSYIAYAPQLGQAIPGDVGWLRLPAFTWPTRPSWLYRLTQGLHVGLGLVIIPVVLAKLWSVIPRLFVWPPARSIAQVLERLSVLMLVGGILFQIVTGVLNIQYDYIFGFSFYTGHYFGAWVFIAGFLLHIVVKIPHMVTGLRSIPMREVLGTNVADTRAQPCDPDGLVSVNPGEATLSRRGALGLVGAGVLLIGVLTVGQTLGGFTRKAALLLPRGRVVSPGDFPVNKTAAAAGITAEAIGPDWRLVLCGGP-AEVVLDRATLAGLPQRTARLPLACVE---------------GWS----AVRTWSGVPLAELALLAGVP--------AARSARVTSLQR-----GGAFGEAKLAANQIAD--PDALLALRVDGADLSLDHGYPARIIVPALPGVHNTKWVAGIEFHKR |
| 1OGP Chain:A ((40-230)) | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SYVTPVDLFYKR------NHGPIPI------V---DHLQSYSVTLTGLIQNPRKLFIKDIRSLPKYNVTATLQCAGNRRTAMSKVRNVRGVGWDVSAIGNAVWGGAKLADVLELVGIPKLTASTNLGARHVEFVSVDRCKEENGGPYK-ASITLSQATNPEADVLLAYEMNGETLNRDHGFPLRVVVPGVIGARSVKWLDSINVIAE |
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General information:
TITO was launched using:
| RESULT:
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Template: 1OGP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -78405 for 1194 contacts (-65.7/contact) +
2D Compatibility (PS) -16574 + (NN) -1029 + (LL) 20004
1D Compatibility (HY) -9600 + (ID) 2200
Total energy: -87804.0 ( -73.54 by residue)
QMean score : 0.474
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