Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MAPAAKNTSQTRRRVAVLGGNRIPFARSDGAYADASNQDMFTAALSGLVDRFGLAGERLDMVVGGAVLKHS-RDFNLMRECVLGSELSPYTPAFDLQQACGTGLQAAIAAADGIAAGRYEVAAAGGVDTTSDPPIGLGDDLRRTLLKLRRSRSNVQRLKLVGTLPASLGVEIPANSEPRTGLSMGEHAAVTAKQMGIKRVDQDELAAASHRNMADAYDRGFFDDLVSPFLG----LYRDDNLRPNSSVEKLATLRPVFGVKAGDATMTAGNSTPLTDGASVALLASEQWAEAHSLAPLAYLVDAETAAVDYVNGNDGLLMAPTYAVPRLLARNGLSLQDFDFYEIHEAFASVVLAHLAAWESEEYCKRRLGLDAALGSIDRSKLNVNGSSLAAGHPFAATGGRILAQTAKQLAEKKAAKKGGGPLRGLISICAAGGQGVAAILEA |
4C2J Chain:A ((20-415)) | -------HMALLRGVFVVAAKRTPFGAYGGLLKDFTATDLSEFAAKAALSAGKVSPETVDSVIMGNVLQSSSDAIYLARHVGLRVGIPKETPALTINRLCGSGFQSIVNGCQEICVKEAEVVLCGGTESMSQAPYCVRNVRF---G-----TKLGSDIKL----EDSL---WVSLTDQHVQLPMAMTAENLAVKHKISREECDKYALQSQQRWKAANDAGYFNDEMAPIEVKKQTMQVDEHARPQTTLEQLQKLPPVFKK---DGTVTAGNASGVADGAGAVIIASEDAVKKHNFTPLARIVGYFVS-GCDP---SIMGIGPVPAISGALKKAGLSLKDMDLVEVNEAFAPQYLAVE---RS-------LDL-------DISKTNVNGGAIALGHPLGGSGSRITAHLVHELRRR-----G--GKYAVGSACIGGGQGIAVIIQS |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 4C2J.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -179404 for 3871 contacts (-46.3/contact) +
2D Compatibility (PS) -41013 + (NN) -14923 + (LL) 3036
1D Compatibility (HY) -16000 + (ID) 6150
Total energy: -254454.0 ( -65.73 by residue)
QMean score : 0.446
|
|
|