Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTPPRVLSIAGSDSGGGAGIQADMRTMALLGVHACVAVTAVTVQNTLGVKDIHEVPNDVVAGQIEAVVTDIGVQAAKTGMLASSRIVATVAATWRRLELSVPLVVDPVCASMHGDPLLAPSALDSLRGQLFPLATLLTPNLDEARLLVDIEVVDAESQRAAAKALHALGPQWVLVKGGHLRSSDGSCDLLYDGVSCYQFDAQRLPTGDDHGGGDTLATAIAAALAHGFTVPDAVDFGKRWVTECLRAAYPLGRGHGPVSPLFRLS
1UB0 Chain:A ((1-256))
--MRVALTIAGSDSGGGAGVQADLKVFFRFGVYGTSALTLVTAQNTLGVQRVHLLPPEVVYAQIESVAQDFPLHAAKTGALGDAAIVEAVAEAVRRF-GVRPLVVDPVM---------AKEAAAALKERLFPLADLVTPNRLEAEALLGRPIRTLKEAEEAAKALLALGPKAVLLKGGHL----EAVDLLATRGGVLRFSAPRVHTRNTHGTGCTLSAAIAALLAKGRPLAEAVAEAKAYLTRALKTAPSLGHGHGPLDH-----
General information:
TITO was launched using:
RESULT:
Template:
1UB0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -172494 for 2229 contacts (-77.4/contact) +
2D Compatibility (PS) -26241 + (NN) -8613 + (LL) 1220
1D Compatibility (HY) -16400 + (ID) 5850
Total energy: -228378.0 ( -102.46 by residue)
QMean score : 0.479
(partial model without unconserved sides chains):
PDB file :
Tito_1UB0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1UB0-query.scw
PDB file :
Tito_Scwrl_1UB0.pdb
: