Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLGADQARAGGPARIWREHSMAAMKPRTGDGPLEATKEGRGIVMRVPLEGGGRLVVELTPDEAAALGDELKGVTS
1LGH Chain:B ((8-21))
---------------------------------------------------------LTEEEAIAVHDQFK----
General information:
TITO was launched using:
RESULT:
Template:
1LGH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -1620 for 52 contacts (-31.2/contact) +
2D Compatibility (PS) -1421 + (NN) -153 + (LL) 3076
1D Compatibility (HY) -1200 + (ID) 350
Total energy: -1668.0 ( -32.08 by residue)
QMean score : 0.663
(partial model without unconserved sides chains):
PDB file :
Tito_1LGH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1LGH-query.scw
PDB file :
Tito_Scwrl_1LGH.pdb
: