Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVRLVPRAFAATVALLAAGFSPATASADPVLVFPGMEIRQ-DNHVCTLGYVDPALKIAFTAGHCRGGGAVTSRDYKVIGHLRAIRDNTPSGSTVATHELIADYEAIVLADDVTASNILP--SGRALESRPGVVLHPGQAVCHFGVSTGETCGTVESVNNGW------F--TMSHGVLSEKGDSGGPVYLAPDGGPAQIVGIFNSVWGGF-PAAVSWRSTSEQVHADLGVTPLA
2EA3 Chain:A ((2-179))
------------------------------DVIGGNAYTIGGRSRCSIGFAVN--GGFITAGHCGRTGATT---ANPTGTFAGS------------SFPGNDYAFVRTGAGVNLLAQVNNYSGGRVQVAGHTAAPVGSAVCRSGSTTGWHCGTITALNSSVTYPEGTVRGLIRTTVCAEPGDSGGSLLA-G----NQAQGVTSGGSGNCRTGGTTFFQPVNPILQAYGLR---
General information:
TITO was launched using:
RESULT:
Template:
2EA3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -97209 for 1472 contacts (-66.0/contact) +
2D Compatibility (PS) -18140 + (NN) -7814 + (LL) 2792
1D Compatibility (HY) -2000 + (ID) 2000
Total energy: -124371.0 ( -84.49 by residue)
QMean score : 0.396
(partial model without unconserved sides chains):
PDB file :
Tito_2EA3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2EA3-query.scw
PDB file :
Tito_Scwrl_2EA3.pdb
: