Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MGRHSKPDPEDSVDDLSDGHAAEQQHWEDISGSYDYPGVDQPDDGPLSSEGHYSAVGGYSASGSEDYPDIPPRPDWEPTGAEPIAAAPPPLFRFGHRGPGDWQAGHRSADGRRGVSIGVIVALVAVVVMVAGVILWRFFGDALSNRSHTAAARCVGGKDTVAVIADPSIADQVKESADSYNASAGPVGDRCVAVAVTSAGSDAVINGFIGKWPTELGGQPGLWIPSSSISAARLTGAAGSQAISDSRSLVISPVLLAVRPELQQA----LANQNWAALPGLQTNPNSLSGLDLPAWGSLRLAMPSSGNGDAAYLAGEAVAAASAPAGAPATAGIGAVR-TLMGARPKLADDSLTAAMDTLLKPGDVATAPVHAVVTTEQQLFQRGQSLSDAENTLGSWLPPGPAAVADYPTVLLSGAWLSQEQTSAASAFARYLHKPEQLAKLARAGFRVSDVKPPSSPVTSFPALPSTLSVGDDSMRATLADTMVTASAGVAATIMLDQSMPNDEGGNSRLSNVVAALENRIKAMPPSSVVGLWTFDGREGRTEVPAGPLADPVNGQPRPAALTAALGKQYSSGGGAVSFTTLRLIYQEMLANYRVGQANSVLVITAGPHTDQTLDGPGLQDFIRKSADPAKPIAVNIIDFGADPDRATWEAVAQLSGGSYQNLETSASPDLATAVNIFLS |
| 3R26 Chain:A ((7-236)) | --------------------------------------------------------------------------------------------------------------------------------------------------------------GKITVFAAASLTNAMQDIATQFKK------EKGVDVVSSFASSSTLARQIEA------GAPADLFISADQKWMDYAVDKKAI-DTATRQTLLGNSLVVVAPKASVQKDFTIDSKTNWTSLLN-----------------GGRLAVGDPEHVPAGIYAKEALQKLG---------AWDTLSPKLA-----PAEDV-RGALALVERN------EAPLGIVYGSDAVA--S----KGVKVVATFPEDSHKKVEYPVAVVEGH-----NNATVKAFYDYLKGPQAAEIFKRYGFTI---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3R26.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -92784 for 2010 contacts (-46.2/contact) +
2D Compatibility (PS) -25259 + (NN) -18095 + (LL) 17668
1D Compatibility (HY) -8400 + (ID) 1950
Total energy: -128820.0 ( -64.09 by residue)
QMean score : 0.390
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