Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
----------MAKKFPLHP----SHPERICWGCDRYCSAESMGCGNGASRTQHPSELFGEDWAGEWEVEGTEDAKEQEAPARQA-----
4GEQ Chain:A ((2-90))
NDAAEVALYERLLQLRVLPGASDVHDVRFVFGDDSRCWIEVAMHGDHVIGNSHPALDPKSRATLEHVLTVQGDLAAFLVVARDMLLASL
General information:
TITO was launched using:
RESULT:
Template:
4GEQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 22721 for 435 contacts (52.2/contact) +
2D Compatibility (PS) -7863 + (NN) -4021 + (LL) 0
1D Compatibility (HY) 800 + (ID) 700
Total energy: 10937.0 ( 25.14 by residue)
QMean score : 0.018
(partial model without unconserved sides chains):
PDB file :
Tito_4GEQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4GEQ-query.scw
PDB file :
Tito_Scwrl_4GEQ.pdb
: