Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MATTLELPKDQLIQHALKQMKSSLGDNTWTDRQKLALTCRILFEAGHDSGLAGQITSRGPEAGT-YYTQQLGLGFDEISAGNLLLVDEDLNVL----HGHGMANPAN-RFHSWVYRARPDVNCIIHTHPLHIAALSTLEVPLQVSHMDLCPLYDDCAFLKDWPGVPVGNEEGEIISAALGDKRAILLSHHGLLATGASIEEACVIAVLLERAAKMQLLAMAAGEIKPIPPALAREAHDWISTPKRHGAAFNYYARRCLPRNSDCLS
4XXF Chain:A ((23-219))
-------------------------------KERLVAAIRIFANEGFDHTVAGHLTVRDPENKHHFWVNPFGLAFRLMTVSDLILVNQEGTVIGGGKEGRRIVNLAGFMIHSAIHKARPEVQAICHSHSTYGKAFSSLGKPLAITTQDSCAFYGDVALLGD---------ESGTIAVALQQKKAIILQNHGLLTVGTTIDSAVAWFIMLEKQCQVQLLADAAGQTIPIDEPQAAFTFKELGHEQAGYFQASPYFQVIEHLQGEEYR
General information:
TITO was launched using:
RESULT:
Template:
4XXF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -147508 for 1440 contacts (-102.4/contact) +
2D Compatibility (PS) -19861 + (NN) -13040 + (LL) 2116
1D Compatibility (HY) -14400 + (ID) 3400
Total energy: -196093.0 ( -136.18 by residue)
QMean score : 0.475
(partial model without unconserved sides chains):
PDB file :
Tito_4XXF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4XXF-query.scw
PDB file :
Tito_Scwrl_4XXF.pdb
: