Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDEKQRYEAGMQVRRAVLGAAHVERSLANLTPFNEEFQEMITRHAWGDIWTRPGLPRHTRSLVTIAMLIGMNRNEELKLHLRAAKNNGVSRDEIKEVIMQSAIYCGIPAANATFHLAESVWDELGVESQQASR
4G9Q Chain:A ((160-244))
--------------------------------------QYTTDYLFRDLWLRPDLAPRDRSLVTIAALISVGQVEQITFHLNKALDNGLSEEQAAEVITHLAFYAGWPNAMSALPVAKAVFEKRRG-------
General information:
TITO was launched using:
RESULT:
Template:
4G9Q.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -35635 for 544 contacts (-65.5/contact) +
2D Compatibility (PS) -9066 + (NN) -6486 + (LL) 3784
1D Compatibility (HY) -5200 + (ID) 1550
Total energy: -54153.0 ( -99.55 by residue)
QMean score : 0.570
(partial model without unconserved sides chains):
PDB file :
Tito_4G9Q.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4G9Q-query.scw
PDB file :
Tito_Scwrl_4G9Q.pdb
: