Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKKMMQGAAALIALVGAGESMALEWMSNSVGFRYGQQFTNPNNPDKFAKRIYSFTHADGYRYGSNFFNLDVFLSDNRDPRKGTDHGGSEVYAVYRHQLYASRVFDRPLGTGLVKDYAFTLGFDASRNNNLASAKKRALVFGPTLKFNGP--GVLDLSLLYYREKNHFGVPGARHPDHTFDTTYMLNLTWMRPFKV-GNHAAKFQGFVNYVGDKGEDYNDKHTAAETLVRTALMVAALPGDKRQPNLWLGVGYEYWHNKFG----------VDGGTGSRTSTPTLNMEFTF-------- |
1TLY Chain:A ((9-275)) | -------------------LSDWWHQSVNVVGSYHTRFGPQIRNDTYLEYEAFAKKDWFDFYGYADAP-------------------VPLFMEIEPRFSIDKLTNTDLSFGPFKEWYFANNYIYDMGRN-KDGRQSTWYMGLGTDIDTGLPMSLSMNVYAKYQWQNYGAANENEWDG-----YRFKIKYFVPITDLWGGQLSYIGFTNFDWGSDLGDDSGNAINGIKTRTNNSIASSHILALN---YDHWHYSVVARYWHDGGQWNDDAELNFGNGNFNVRSTGWGGYLVVGYNFHHH |
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General information:
TITO was launched using:
| RESULT:
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Template: 1TLY.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -5063 for 1602 contacts (-3.2/contact) +
2D Compatibility (PS) -24181 + (NN) -1148 + (LL) 2240
1D Compatibility (HY) -4400 + (ID) 1400
Total energy: -33952.0 ( -21.19 by residue)
QMean score : 0.079
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