Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAGSLIERALGLLELLASDARGLPLQQLADRLDIPKSAAHRMLAELIRLGYVRQDDDTSRYRLSTRLAALGFRFLASSGVVDLVQPVLDGLARETGELVRLGVIEGDRQTWIAKSQGATSGLRYDPDMGREAPLFYTASGHAWLASLSDKAALALVERQGVGAARDFGPNAPRSRSELLRYLKRAREHGYAWQIECSAPGMAAMAALVRHPEDGRALGVLSVAGPSARFGEARMHELAPLLLAAAQDLSHASQASELFR
1MKM Chain:A ((4-249))
--MNTLKKAFEILDFIVKNPGDVSVSEIAEKFNMSVSNAYKYMVVLEEKGFVLRKKD-KRYVPGYKLIEYGSFVLRRFNIRDIAHDHLVDIMKRTGETVHLILKDGFEGVYIDKVEG-EQSIPMVSRLGMKVDLYSTASGKSILAFVPEKELKEYLKIVEL---KPKTPNTITNPRVLKRELEKIRKRGYAVDNEENEIGIMCVGVPIF-DHNGYPVAGVSISGVARKFTEEKIEEYSDVLKEKAEEISRKLGY-----
General information:
TITO was launched using:
RESULT:
Template:
1MKM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -164787 for 1936 contacts (-85.1/contact) +
2D Compatibility (PS) -27649 + (NN) -22411 + (LL) 1192
1D Compatibility (HY) -14800 + (ID) 2700
Total energy: -231155.0 ( -119.40 by residue)
QMean score : 0.670
(partial model without unconserved sides chains):
PDB file :
Tito_1MKM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1MKM-query.scw
PDB file :
Tito_Scwrl_1MKM.pdb
: