Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKAIYYHAGCAICVEAERSLLPLLDRKQVDIEVVHLAEQSARIAEAEKAGVKSVPALVVDGQVLHLNFGAALSDLK
2K8S Chain:A ((3-78))
-SKAIFYHAGCPVCVSAEQAVANAIDPSKYTVEIVHLGTDKARIAEAEKAGVKSVPALVIDGAAFHINFGAGIDDLK
General information:
TITO was launched using:
RESULT:
Template:
2K8S.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -61370 for 538 contacts (-114.1/contact) +
2D Compatibility (PS) -8040 + (NN) -742 + (LL) 208
1D Compatibility (HY) -8800 + (ID) 2250
Total energy: -80994.0 ( -150.55 by residue)
QMean score : 0.685
(partial model without unconserved sides chains):
PDB file :
Tito_2K8S.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2K8S-query.scw
PDB file :
Tito_Scwrl_2K8S.pdb
: