Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKQMGSMHPVQVIAVTGGKGGVGKTNVSVNLALALADLGRRVMLLDADLGLANVDVLLGLTPKRTLADVIEGRCELRDVLLLGPGGVRIVPAASGTQSMVHLSPMQHAGLIQAFSDISDNLDVLVVDTAAGIGDSVVSFVRAAQEVLLVVCDEPTSITDAYALIKLLNRDHGMTRFRVLANMAHSPQEGRNLFAKLTKVTDRFLDVALQYVGVIPYDESVRKAVQKQRAVYEAFPRSKASLAFKAVAQKVDSWPLPANPRGHLEFFVERLVQHPATGSAV
4RZ3 Chain:A ((31-267))
----------RTIAVTSGKGGVGKSNVSLNFSLSLSKLGFRVLLLDMAIGMGNIDILLGESSSLALADWFSARLPLSELVKSGPEHLSYIAGGTGAAQWQGLDTASIDRFLTELQAVASQYDYLIFDMGAGASGERLYFLKSVDDVFVVTTPEPTAMTDAYAMMKYMHAAGSEAPFSVIVNRAGKEREGYEVFERLKHVTGRFLNKDIALLGIIPEDRTVARAVVSQTPFVLLDPAAKASKAVRQMAFRYAP----------------------------
General information:
TITO was launched using:
RESULT:
Template:
4RZ3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -203921 for 2042 contacts (-99.9/contact) +
2D Compatibility (PS) -25676 + (NN) -9525 + (LL) 2400
1D Compatibility (HY) -22800 + (ID) 4150
Total energy: -263672.0 ( -129.12 by residue)
QMean score : 0.575
(partial model without unconserved sides chains):
PDB file :
Tito_4RZ3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4RZ3-query.scw
PDB file :
Tito_Scwrl_4RZ3.pdb
: