Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSLHPVSISLSSYGADLVRSRGQASFLPLLAMAGAQRVELREELFAGPPDTEALTAAIQLQGLECVFSSPLELWREDGQLNPELEPTLRRAEACGAGWLKVSLGLLPEQPDLAALGRRLARHGLQLLVENDQTPQGGRIEVLERFFRLAERQQLDLAMTFDIGNWRWQEQAADEAALRLGRYVGYVHCKAVIRNRDGKLVAVPPSAADLQYWQRLLQHFPEGVARAIEYPLQGDDLLSLSRRHIAALARLGQPQEERQHG
1YX1 Chain:B ((5-255))
--LHPVSISLSSYGADLVRSRGQASFLPLLAMAGAQRVELREELFAGPPDTEALTAAIQLQGLECVFSSPLELWREDGQLNPELEPTLRRAEACGAGWLKVSLGLLPEQPDLAALGRRLARHGLQLLVENDQTPQGGRIEVLERFFRLAERQQLDLAMTFDIGNWRWQEQAADEAALRLGRYVGYVHCKAVIRNRDGKLVAVPPSAADLQYWQRLLQHFPEGVARAIEYPLQGDDLLSLSRRHIAALARLGQP-------
General information:
TITO was launched using:
RESULT:
Template:
1YX1.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -162371 for 2074 contacts (-78.3/contact) +
2D Compatibility (PS) -28308 + (NN) -18835 + (LL) 600
1D Compatibility (HY) -33600 + (ID) 12550
Total energy: -255064.0 ( -122.98 by residue)
QMean score : 0.691
(partial model without unconserved sides chains):
PDB file :
Tito_1YX1.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YX1-query.scw
PDB file :
Tito_Scwrl_1YX1.pdb
: