Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPYQHILVAVDLTDECDPVMKRAAALATSNQARLSVVHVVEPMAMAFGGDVPMDLSMLQQQQFDQARERLDAFAVRYPDLGSEQRHLVYGQPRQEIHRLAAEQACDLIVVGSHGRHGLALLLGSTANDVLHGAPCDVLAVHLKKA
3TNJ Chain:A ((6-148))
--YHHILLAVDFSSEDSQVVQKVRNLASQIGARLSLIHVLD-----YGTAIPLDTETTYDAMLDVEKQKLSQIG-NTLGIDPAHRWLVWGEPREEIIRIAEQENVDLIVVGSH--------LGSTANSVLHYAKCDVLAVRLR--
General information:
TITO was launched using:
RESULT:
Template:
3TNJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -101195 for 906 contacts (-111.7/contact) +
2D Compatibility (PS) -14465 + (NN) -8828 + (LL) 1504
1D Compatibility (HY) -13600 + (ID) 2850
Total energy: -139434.0 ( -153.90 by residue)
QMean score : 0.682
(partial model without unconserved sides chains):
PDB file :
Tito_3TNJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TNJ-query.scw
PDB file :
Tito_Scwrl_3TNJ.pdb
: