Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSEQDFREIARNGLWRNNPGLVQLLGLCPLLGTSNSTVNALGLGLATMLVLACSNAAVSLVRGAVSEAIRLPAFVMIIAVLTTCIELLMQAWTYELYQVLGIFIPLITTNCVILGRAEAFAAKNGVLRASFDGLLMGLGFALVLLVLGGLRELLGQGTLLADMHLLFGPAAADWKIQPFPQYQGFLLAILPPGAFIMLGLLIALKNRIDESLAERAKVQAGDVPATQRQRQRVRVTGVIE
4P6V Chain:D ((7-208))
-----LKKSVLAPVLDNNPIALQVLGVCSALAVTTKLETAFVMTLAVMFVTALSNFFVSLIRN-----VRIIVQMAIIASLVIVVDQILK----DISKQLSVFVGLIITNCIVMGRAEAFAP----IPSFIDGIGNGLGYGFVLMTVGFFRELLGSGKLFGLEVLPNG------------------LMLLAPSAFFLIGFMIWAIRTFKPEQVEA-------------------------
General information:
TITO was launched using:
RESULT:
Template:
4P6V.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -133759 for 1371 contacts (-97.6/contact) +
2D Compatibility (PS) -18420 + (NN) -5485 + (LL) 4600
1D Compatibility (HY) -19600 + (ID) 3200
Total energy: -175864.0 ( -128.27 by residue)
QMean score : 0.275
(partial model without unconserved sides chains):
PDB file :
Tito_4P6V.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4P6V-query.scw
PDB file :
Tito_Scwrl_4P6V.pdb
: