Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGYLKNHWWKRWIRRRGCKLAGGPASVGKRTTLVLEERVELGHLRIVPPRLEIGAYSYVRSGTD-------------LSLVASIGRFCSIGSDCFIGQEKHTHPSDWVSSHPFQHTGTA-------LRYEPALSYAEIGHDVWIGHSAMVMEGVKVGTGAIIATRAVVTRDVPPYAIVAGTPAQVIRYRHPPEIIEGLLASRWWELDSAFLTGLPLDRPREFLAALEAREAPRAAYRRMTITRQGCRLD
1KK4 Chain:E ((29-183))
-------------------------------------------------NVEVGEYSYYDSKNGETFDKQILYHYPILNDKLKIGKFCSIGPGVTIIMNGANHRMDG-STYPFNLFGNGWEKHMPKLDQLPIKGDTIIGNDVWIGKDVVIMPGVKIGDGAIVAANSVVVKDIAPYMLAGGNPANEIKQRFDQDTINQLLDIKWWN--------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1KK4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -94861 for 922 contacts (-102.9/contact) +
2D Compatibility (PS) -14427 + (NN) -5691 + (LL) 6868
1D Compatibility (HY) -10000 + (ID) 2700
Total energy: -120811.0 ( -131.03 by residue)
QMean score : 0.391
(partial model without unconserved sides chains):
PDB file :
Tito_1KK4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1KK4-query.scw
PDB file :
Tito_Scwrl_1KK4.pdb
: