Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTLRSVCVFCGASPGASPVYQEAAVALGRHLAERGLTLVYGGGAVGLMGTVADAALAAGGEVIGIIPQSLQEAEIGHKGLTRLEVVDGMHARKARMAELADAFIALPGGLGTLEELFEVWTWGQLGYHAKPLGLLEVNGFYDPLLTFLDHLVDERFVRAEHRGMLQRGASPEALLDALAAWTPSVAPKWVDRTPQ
1YDH Chain:A ((8-188))
-RFRKICVFCGSHSGHREVFSDAAIELGNELVKRKIDLVYGGGSVGLMGLISRRVYEGGLHVLGIIPKALMPIEISGETVGDVRVVADMHERKAAMAQEAEAFIALPGGYGTMEELLEMITWSQLGIHKKTVGLLNVDGYYNNLLALFDTGVEEGFIKPGARNIVVSAPTAKELMEKMEEYT-------------
General information:
TITO was launched using:
RESULT:
Template:
1YDH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -154524 for 1504 contacts (-102.7/contact) +
2D Compatibility (PS) -20410 + (NN) -11947 + (LL) 704
1D Compatibility (HY) -24400 + (ID) 4000
Total energy: -214577.0 ( -142.67 by residue)
QMean score : 0.535
(partial model without unconserved sides chains):
PDB file :
Tito_1YDH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YDH-query.scw
PDB file :
Tito_Scwrl_1YDH.pdb
: