Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKCLLLALALTCGAQALIVTQTMKGLDIQKVAGTWYSLAMAASDISLLDAQSAPLRVYVEELKPTPEGDLEILLQKWENGECAQKKIIAEKTKIPAVFKIDALNENKVLVLDTDYKKYLLFCMENSAEPEQSLACQCLVRTPEVDDEALEKFDKALKALPMHIRLSFNPTQLEEQCHI
4GNY Chain:A ((2-162))
-----------------IVTQTMKGLDIQKVAGTWYSLAMAASDISLLDAQSAPLRVYVEELKPTPEGDLEILLQKWENGECAQKKIIAEKTKIPAVFKIDALNENKVLVLDTDYKKYLLFCMENS----QSLACQCLVRTPEVDDEALEKFDKALKALPMHIRLSFNPTQLEEQCHI
General information:
TITO was launched using:
RESULT:
Template:
4GNY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -104967 for 1179 contacts (-89.0/contact) +
2D Compatibility (PS) -16032 + (NN) 3008 + (LL) 2228
1D Compatibility (HY) -23600 + (ID) 7850
Total energy: -147213.0 ( -124.86 by residue)
QMean score : 0.482
(partial model without unconserved sides chains):
PDB file :
Tito_4GNY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4GNY-query.scw
PDB file :
Tito_Scwrl_4GNY.pdb
: