Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLLVLAVLLTVAAADSGISPRAVWQFRKMIKCVIPGSDPFLEYNNYGCYCGLGGSGTPVDELDKCCQTHDNCYDQAKKLDSCKFLLDNPYTHTYSYSCSGSAITCSSKNKECEAFICNCDRNAAICFSKAPYNKAHKNLDTKKYCQS
1HN4 Chain:A ((3-131))
-----------------GISSRALWQFRSMIKCAIPGSHPLMDFNNYGCYCGLGGSGTPVDELDRCCETHDNCYRDAKNLDSCKFLVDNPYTESYSYSCSNTEITCNSKNNACEAFICNCDRNAAICFSKAPYNKEHKNLDTKKYC--
General information:
TITO was launched using:
RESULT:
Template:
1HN4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -71530 for 948 contacts (-75.5/contact) +
2D Compatibility (PS) -13875 + (NN) -8478 + (LL) 2344
1D Compatibility (HY) -17600 + (ID) 5250
Total energy: -114389.0 ( -120.66 by residue)
QMean score : 0.444
(partial model without unconserved sides chains):
PDB file :
Tito_1HN4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1HN4-query.scw
PDB file :
Tito_Scwrl_1HN4.pdb
: