Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKP
1A4R Chain:B ((1-136))
MQTIKCVVVGDVAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKP
General information:
TITO was launched using:
RESULT:
Template:
1A4R.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -67948 for 945 contacts (-71.9/contact) +
2D Compatibility (PS) -14486 + (NN) -7256 + (LL) 0
1D Compatibility (HY) -20800 + (ID) 6750
Total energy: -117240.0 ( -124.06 by residue)
QMean score : 0.509
(partial model without unconserved sides chains):
PDB file :
Tito_1A4R.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1A4R-query.scw
PDB file :
Tito_Scwrl_1A4R.pdb
: