Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEPKKSRRCVLL
1GRN Chain:A ((1-191))
MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEPKKSRRCVLL
General information:
TITO was launched using:
RESULT:
Template:
1GRN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -135747 for 1544 contacts (-87.9/contact) +
2D Compatibility (PS) -20094 + (NN) -8222 + (LL) 0
1D Compatibility (HY) -28000 + (ID) 9550
Total energy: -201613.0 ( -130.58 by residue)
QMean score : 0.826
(partial model without unconserved sides chains):
PDB file :
Tito_1GRN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1GRN-query.scw
PDB file :
Tito_Scwrl_1GRN.pdb
: