Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MALKSLVVLPLLVLVLLLVRVQPSLGKESAAAKFERQHMDSGNSPSSSSNYCNLMMCCRKMTQGKCKPVNTFVHESLADVKAVCSQKKVTCKNGQTNCYQSKSTMRITDCRETGSSKYPNCAYKTTQVEKHIIVACGGKPSVPVHFDASV
3DJX Chain:A ((1-124))
--------------------------KESAAAKFERQHMDSGNSPSSSSNYCNLMMCCRKMTQGKCKPVNTFVHESLADVKAVCSQKKVTCKNGQTNCYQSKSTMRITDCRETGSSKYPNCAYKTTQVEKHIIVACGGKPSVPVHFDASV
General information:
TITO was launched using:
RESULT:
Template:
3DJX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -25618 for 800 contacts (-32.0/contact) +
2D Compatibility (PS) -13957 + (NN) -12053 + (LL) 3040
1D Compatibility (HY) -14800 + (ID) 6200
Total energy: -69588.0 ( -86.99 by residue)
QMean score : 0.478
(partial model without unconserved sides chains):
PDB file :
Tito_3DJX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3DJX-query.scw
PDB file :
Tito_Scwrl_3DJX.pdb
: