Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
FPTDDDDKIVGGYTCAANSIPYQVSLNSGSHFCGGSLINSQWVVSAAHCYKSRIQVRLGEHNIDVLEGNEQFINAAKIITHPNFNGNTLDNDIMLIKLSSPATLNSRVATVSLPRSCAAAGTECLISGWGNTKSSGSSYPSLLQCLKAPVLSDSSCKSSYPGQITGNMICVGFLEGGKDSCQGDSGGPVVCNGQLQGIVSWGYGCAQKNKPGVYTKVCNYVNWIQQTIAAN
1YF4 Chain:A ((1-223))
--------IVGGYTCAANSIPYQVSLNSGSHFCGGSLINSQWVVSAAHCYKSRIQVRLGEHNIDVLEGNEQFINAAKIITHPNFNGNTLDNDIMLIKLSSPATLNSRVATVSLPRSCAAAGTECLISGWGNTKSSGSSYPSLLQCLKAPVLSDSSCKSSYPGQITGNMICVGFLEGGKDSCQGDSGGPVVCNGQLQGIVSWGYGCAQKNKPGVYTKVCNYVNWIQQTIAAN
General information:
TITO was launched using:
RESULT:
Template:
1YF4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -155108 for 1910 contacts (-81.2/contact) +
2D Compatibility (PS) -24701 + (NN) -14601 + (LL) -196
1D Compatibility (HY) -31200 + (ID) 11150
Total energy: -236956.0 ( -124.06 by residue)
QMean score : 0.825
(partial model without unconserved sides chains):
PDB file :
Tito_1YF4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YF4-query.scw
PDB file :
Tito_Scwrl_1YF4.pdb
: