Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MASKPQPIAAANWKCNGSESLLVPLIETLNAATFDHDVQCVVAPTFLHIPMTKARLTNPKFQIAAQNAITRSGAFTGEVSLQILKDYGISWVVLGHSERRLYYGETNEIVAEKVAQACAAGFHVIVCVGETNEEREAGRTAAVVLTQLAAVAQKLSKEAWSRVVIAYEPVWAIGTGKVATPQQAQEVHELLRRWVRSKLGTDIAAQLRILYGGSVTAKNARTLYQMRDINGFLVGGASLKPEFVEIIEATK
4HHP Chain:A ((3-251))
--SKPQPIAAANWKCNGSESLLVPLIETLNAATFDHDVQCVVAPTFLHIPMTKARLTNPKFQIAAQNAITRSGAFTGEVSLQILKDYGISWVVLGHSERRLYYGDTNEIVAEKVAQACAAGFHVIVCVGETNEEREAGRTAAVVLTQLAAVAQKLSKEAWSRVVIAYEPVWAIGTGKVATPQQAQEVHELLRRWVRSKLGTDIAAQLRILYGGSVTAKNARTLYQMRDINGFLVGGASLKPEFVEIIEATK
General information:
TITO was launched using:
RESULT:
Template:
4HHP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -186692 for 2096 contacts (-89.1/contact) +
2D Compatibility (PS) -27257 + (NN) -10962 + (LL) 352
1D Compatibility (HY) -34000 + (ID) 12400
Total energy: -270959.0 ( -129.27 by residue)
QMean score : 0.831
(partial model without unconserved sides chains):
PDB file :
Tito_4HHP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4HHP-query.scw
PDB file :
Tito_Scwrl_4HHP.pdb
: