Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MADNFSLHDALSGSGNPNPQGWPGAWGNQPAGAGGYPGASYPGAYPGQAPPGAYPGQAPPGAYPGAPGAYPGAPAPGVYPGPPSGPGAYPSSGQPSATGAYPATGPYGAPAGPLIVPYNLPLPGGVVPRMLITILGTVKPNANRIALDFQRGNDVAFHFNPRFNENNRRVIVCNTKLDNNWGREERQSVFPFESGKPFKIQVLVEPDHFKVAVNDAHLLQYNHRVKKLNEISKLGISGDIDLTSASYTMI
4LBM Chain:A ((1-139))
---------------------------------------------------------------------------------------------------------------GPLIVPYNLPLPGGVVPRMLITILGTVKPNANRIALDFQRGNDVAFHFNPRFNENNRRVIVCNTKLDNNWGREERQSVFPFESGKPFKIQVLVEPDHFKVAVNDAHLLQYNHRVKKLNEISKLGISGDIDLTSASYTMI
General information:
TITO was launched using:
RESULT:
Template:
4LBM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -102502 for 1015 contacts (-101.0/contact) +
2D Compatibility (PS) -14937 + (NN) -3469 + (LL) -2748
1D Compatibility (HY) -20400 + (ID) 6950
Total energy: -151006.0 ( -148.77 by residue)
QMean score : 0.323
(partial model without unconserved sides chains):
PDB file :
Tito_4LBM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4LBM-query.scw
PDB file :
Tito_Scwrl_4LBM.pdb
: