Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MMYSKLLTLTTLLLPTALALPSLVERACDYTCGSNCYSSSDVSTAQAAGYQLHEDGETVGSNSYPHKYNNYEGFDFSVSSPYYEWPILSSGDVYSGGSPGADRVVFNENNQLAGVITHTGASGNNFVECT
7RNT Chain:A ((1-104))
--------------------------ACDYTCGSNCYSSSDVSTAQAAGYKLHEDGETVGSNSYPHKYNNWEGFDFSVSSPYYEWPILSSGDVYSGGSPGADRVVFNENNQLAGVITHTGASGNNFVECT
General information:
TITO was launched using:
RESULT:
Template:
7RNT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -50744 for 769 contacts (-66.0/contact) +
2D Compatibility (PS) -11848 + (NN) -10078 + (LL) 2712
1D Compatibility (HY) -12400 + (ID) 5100
Total energy: -87458.0 ( -113.73 by residue)
QMean score : 0.511
(partial model without unconserved sides chains):
PDB file :
Tito_7RNT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-7RNT-query.scw
PDB file :
Tito_Scwrl_7RNT.pdb
: