Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSAIERITKAAHLIDMNDIIREGNPTLRTVAEEVTFPLSDQEIILGEKMMQFLKHSQDPVMAEKMGLRGGVGLAAPQLDISKRIIAVLVPNIVEEGETPQEAYDLEAIMYNPKIVSHSVQDAALGEGEGCLSVDRNVPGYVVRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEIDHINGIMFYDRINEKDPFAVKDGLLILE
3SW8 Chain:P ((2-203))
-SAIERITKAAHLIDMNDIIREGNPTLRTVAEEVTFPLSDQEIILGEKMMQFLKHSQDPVMAEKMGLRGGVGLAAPQLDISKRIIAVLVPNI--------EAYDLEAIMYNPKIVSHSVQDAALGEGEGCLSVDRNVPGYVVRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEIDHINGIMFYDRINEKDPFAVKDGLLILE
General information:
TITO was launched using:
RESULT:
Template:
3SW8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -112944 for 1549 contacts (-72.9/contact) +
2D Compatibility (PS) -20330 + (NN) -3642 + (LL) 572
1D Compatibility (HY) -28800 + (ID) 9700
Total energy: -174844.0 ( -112.88 by residue)
QMean score : 0.476
(partial model without unconserved sides chains):
PDB file :
Tito_3SW8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3SW8-query.scw
PDB file :
Tito_Scwrl_3SW8.pdb
: