Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAAGRLFLSRLRAPFSSMAKSPLEGVSSSRGLHAGRGPRRLSIEGNIAVGKSTFVKLLTKTYPEWHVATEPVATWQNIQAAGTQKACTAQSLGNLLDMMYREPARWSYTFQTFSFLSRLKVQLEPFPEKLLQARKPVQIFERSVYSDRYIFAKNLFENGSLSDIEWHIYQDWHSFLLWEFASRITLHGFIYLQASPQVCLKRLYQRAREEEKGIELAYLEQLHGQHEAWLIHKTTKLHFEALMNIPVLVLDVNDDFSEEVTKQEDLMREVNTFVKNL
1P5Z Chain:B ((23-263))
------------------------------------RIKKISIEGNIAAGKSTFVNILKQLCEDWEVVPEPVARWCNVQST---------NGGNVLQMMYEKPERWSFTFQTYACLSRIRAQLASLNGKLKDAEKPVLFFERSVYSDRYIFASNLYESECMNETEWTIYQDWHDWMNNQFGQSLELDGIIYLQATPETCLHRIYLRGRNEEQGIPLEYLEKLHYKHESWLLHRTLKTNFDYLQEVPILTLDVNEDF---KDKYESLVEKVKEFLSTL
General information:
TITO was launched using:
RESULT:
Template:
1P5Z.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -128291 for 1749 contacts (-73.4/contact) +
2D Compatibility (PS) -23658 + (NN) -1513 + (LL) 2780
1D Compatibility (HY) -26400 + (ID) 6000
Total energy: -183082.0 ( -104.68 by residue)
QMean score : 0.413
(partial model without unconserved sides chains):
PDB file :
Tito_1P5Z.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1P5Z-query.scw
PDB file :
Tito_Scwrl_1P5Z.pdb
: