Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
APEDKEYQSVEEEMQSTIREHRDGGNAGGIFNRYNVIRIQKVVNKKLRERFCHRQKEVSEENHNHHNERMLFHGSPFINAIIHKGFDERHAYIGGMFGAGIYFAENSSKSNQYVYGIGGGTGCPTHKDRSCYICHRQMLFCRVTLGKSFLQFSTMKMAHAPPGHHSVIGRPSVNGLAYAEYVIYRGEQAYPEYLITYQIMKPEAPS
3UH4 Chain:B ((9-212))
APEDKEYQSVEEEMQSTIREHRDGGNAGGIFNRYNVIRIQKVVNKKLRERFCHRQKEVSEENHNHHNERMLFHGSPFINAIIHKGFDERHAYIGGMFGAGIYFAENSSKSNQYVYGIGGGTGCPTHKDRSCYICHRQMLFCRVTLGKSFLQFSTIKMAHAPPGHHSVIGRPSVNGLAYAEYVIYRGEQAYPEYLITYQIMKPEA--
General information:
TITO was launched using:
RESULT:
Template:
3UH4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -72720 for 1596 contacts (-45.6/contact) +
2D Compatibility (PS) -22434 + (NN) -10518 + (LL) -168
1D Compatibility (HY) -26800 + (ID) 10150
Total energy: -142790.0 ( -89.47 by residue)
QMean score : 0.519
(partial model without unconserved sides chains):
PDB file :
Tito_3UH4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3UH4-query.scw
PDB file :
Tito_Scwrl_3UH4.pdb
: