Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVICTAEDMLNPNYEDLLIRKSNHSFLVQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGKFYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQCSGVVVV
2Z9L Chain:A ((1-303))
SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVIC-----LNPNYEDLLIRKSNHSFLVQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGKFYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQCSGV---
General information:
TITO was launched using:
RESULT:
Template:
2Z9L.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -242457 for 2463 contacts (-98.4/contact) +
2D Compatibility (PS) -32779 + (NN) -20388 + (LL) 1008
1D Compatibility (HY) -46400 + (ID) 14900
Total energy: -355916.0 ( -144.51 by residue)
QMean score : 0.514
(partial model without unconserved sides chains):
PDB file :
Tito_2Z9L.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2Z9L-query.scw
PDB file :
Tito_Scwrl_2Z9L.pdb
: