Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | --------MEHTHAHLAANSSLSWWSPGSACG---LGFVPVVYYSLLLCLGLPANILTVIILSQLVARRQKSSYNYLLA-LAAADILVLF---FIVFVDFLLEDFILNMQMPQVPDKIIEVLEFS-SIHTSIWITVPLTIDRYIAVCHPLKYHTVSYPARTRKVIVSVYITCFLTSIPYYWWPNIWTE--------DYISTS----VHHVLIWIHCFTVYLVPCSIFFILNSIIVYKLRRKSNFRLRGYSTGKTTAILFTITSIFATLWAPRIIMILYHLYGAPIQNRWLVHIMSDIANMLALLNTAINFFLYCFISKRFRTMAAATLKAFFKCQKQPVQFYTNHNFSITSSPWISPANSHCIKMLVYQYDKNGKPIKVSP |
| 1F88 Chain:A ((1-348)) | MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQH--KKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFG-----PTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVH-FIIPLIVIFFCYGQLVFTVKEAAASATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTH---QGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLC----CGKNP-----STTVSKTETSQVAPA----------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1F88.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -219237 for 2408 contacts (-91.0/contact) +
2D Compatibility (PS) -31024 + (NN) 1086 + (LL) 3404
1D Compatibility (HY) -26800 + (ID) 3200
Total energy: -275771.0 ( -114.52 by residue)
QMean score : 0.249
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