Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MEGINKTAKMQFFFRPFSPDPEVQMLIFVVFLMMYLTSLGGNATIAVIVQINHSLHTPMYFFLANLAVLEIFYTSSITPLALANLLSMGKTPVSITGCGTQMFFFVFLGGADCVLLVVMAYDQFIAICHPLRYRLIMSWSLCVELLVGSLVLGFLLSL-PLTILIFHLPFCHNDEIYHFYCDMPAVMRLAC--ADTRVHKTALYIISFIVLSIPLSLISISYVFIVVAILR-IRSAEGR----QQAYSTCSSHI-------LVVLLQYGC-------TSFIYLSPSSSYSPEMGRVVSVAYTFITPILNPLIYSLRNKELKDALRKALRKF |
| 3VGA Chain:A ((23-305)) | ----------------------------------------GNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAIT--ISTGFC-AACHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPM----LGWNNCGQ-------SQGCGEGQVACLFEDVVPMNYMVYFNFFACVLVPLLLMLGVYLRIFLAARRQLKQMESQPLPGERARSTLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKIIRSH |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3VGA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -236203 for 1776 contacts (-133.0/contact) +
2D Compatibility (PS) -25349 + (NN) -2870 + (LL) 4744
1D Compatibility (HY) -20000 + (ID) 3250
Total energy: -282928.0 ( -159.31 by residue)
QMean score : 0.251
|
|
|