Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MERTNDSTSTEFFLVGLSAHPKLQT-------------VFFVLILWMYLMILLG---NGVLISVIIFDSHLHTPMYFFLCNLSFLDVCYTSSSVPLILASFLAVKKKVSFSGCMVQMFISFAMGATECMILGTMALDRYVAICYPLRYPVIMSKGAYVAMAAGSWVTGLVDSVVQTAFAMQLPFCANNVIKHFVCEILAILKLACA------DISINVISMTGSNLIV-LVIPLLVISISYIFIVATILRIPSTEG----KHKAFSTCSAHLTVVIIFYGTIFFMYAKPESKASVDSGNE-DIIEALISLFYGVMTPMLNPLIYSLRNKDVKAAVKNILC--RKNFSDGK---------------- |
1U19 Chain:A ((4-349)) | ---MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFR-FGENHAIMGVAFTWVMALACAA-----PPLVGWS------RYIPEGM---QCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPLGDDEASTTVSKTETSQVAPA |
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General information:
TITO was launched using:
| RESULT:
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Template: 1U19.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -259651 for 2398 contacts (-108.3/contact) +
2D Compatibility (PS) -30120 + (NN) 3812 + (LL) 2224
1D Compatibility (HY) -1600 + (ID) 600
Total energy: -285935.0 ( -119.24 by residue)
QMean score : 0.160
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